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Evolution of Bacterial Genomes




Recent Publications


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Tan-a-ram P., Cardoso T., Daveran-Mingot M.L., Kanchanatawee S., Loubière P., Girbal L., and Cocaign-Bousquet M. (2011). Assessment of the diversity of dairy Lactococcus lactis subsp. lactis isolates by an integrated approach combining phenotypic, genomic, and transcriptomic analyses. Appl. Environ. Microbiol. 77: 739-748. (article)
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Passerini,D., Beltramo,C., Coddeville,M., Quentin,Y., Ritzenthaler,P., Daveran-Mingot,M.L., and Le Bourgeois,P. (2010). Genes but not genomes reveal bacterial domestication of Lactococcus lactis. PLoS ONE. 5:e15306. (article).
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Nolivos S, Pages C, Rousseau P, Le Bourgeois P, and Cornet F. (2010). Are two better than one? Analysis of an FtsK/Xer recombination system that uses a single recombinase. Nucleic Acids Res. 38:6477-6489. ( article)
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Coddeville, M. and Ritzenthaler, P. (2010) Control of directionality in bacteriophage mv4 site-specific recombination: functional analysis of the Xis factor. J. Bacteriol. (2010) 192, 624-635. (article)
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Coddeville, M., Auvray, F., Mikkonen, M., and Ritzenthaler, P. (2007) Single independent operator sites are involved in the genetic switch of the Lactobacillus delbrueckii bacteriophage mv4. Virology. 364: 256-268. (article)

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Le Bourgeois P., Bugarel, M., Campo, N., Daveran-Mingot, M. L., Labonte, J., Lanfranchi, D., Lautier, T., Pages, C., and Ritzenthaler, P. (2007) The Unconventional Xer Recombination Machinery of Streptococci/Lactococci. PLoS. Genet. 3: e117. (article).

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Campo, N., Dias, M. J., Daveran-Mingot, M. L., Ritzenthaler, P., and Le Bourgeois P. (2004) Chromosomal constraints in Gram-positive bacteria revealed by artificial inversions. Mol. Microbiol. 51: 511-522. (article).

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Deutsch, S. M., Neveu, A., Guezenec, S., Ritzenthaler, P., and Lortal, S. (2003) Early lysis of Lactobacillus helveticus CNRZ 303 in Swiss cheese is not prophage-related. Int. J. Food Microbiol.  81: 147-157.
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Campo, N., Daveran-Mingot, M. L., Leenhouts, K., Ritzenthaler, P., and Le Bourgeois P. (2002) Cre-loxP recombination system for large genome rearrangements in Lactococcus lactis. Appl. Environ. Microbiol. 68: 2359-2367. (article)

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Campo, N., Dias, M. J., Daveran-Mingot, M. L., Ritzenthaler, P., and Le Bourgeois P. (2002) Genome plasticity in Lactococcus lactis. Antonie Van Leeuwenhoek. 82: 123-132. Article

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Le Bourgeois P., Daveran-Mingot, M. L., and Ritzenthaler, P. (2000) Genome plasticity among related Lactococcus strains: identification of genetic events associated with macrorestriction polymorphisms. J. Bacteriol. 182: 2481-2491. (article)
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Auvray, F., Coddeville, M., Ordonez, R. C., and Ritzenthaler, P. (1999) Unusual structure of the attB site of the site-specific recombination system of Lactobacillus delbrueckii bacteriophage mv4. J. Bacteriol. 181: 7385-7389. (article)
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F. Auvray, M. Coddeville, G. Espagno and P. Ritzenthaler. (1999) Integrative recombination of Lactobacillus delbrueckii bacteriophage mv4 : functional analysis of the reaction and structure of the attP site. Mol. Gen. Genet. 262 : .355-366. (article)

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Daveran-Mingot, M. L., Campo, N., Ritzenthaler, P., and Le Bourgeois P. (1998) A natural large chromosomal inversion in Lactococcus lactis is mediated by homologous recombination between two insertion sequences. J. Bacteriol. 180: 4834-4842. (article)

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Prevots, F., and Ritzenthaler, P. (1998) Complete sequence of the new lactococcal abortive phage resistance gene abiO. J. Dairy Sci. 81: 1483-1485.(article)

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Auvray, F., Coddeville, M., Ritzenthaler, P., and Dupont, L. (1997) Plasmid integration in a wide range of bacteria mediated by the integrase of Lactobacillus delbrueckii bacteriophage mv4. J. Bacteriol. 179: 1837-1845 (article).

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Mikkonen, M., Dupont, L., Alatossava, T., and Ritzenthaler, P. Defective site-specific integration elements are present in the genome of virulent bacteriophage LL-H of Lactobacillus delbrueckii. Appl. Environ. Microbiol. 62: 1847-1851. (article)

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Alatossava, T., Forsman, P., and Ritzenthaler, P. Genome homology and superinfection immunity between temperate and virulent Lactobacillus delbrueckii bacteriophages. Arch. Virol. 140: 2261-2268.

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Dupont, L., Boizet-Bonhoure, B., Coddeville, M., Auvray, F., and Ritzenthaler, P. Characterization of genetic elements required for site-specific integration of Lactobacillus delbrueckii subsp. bulgaricus bacteriophage mv4 and construction of an integration-proficient vector for Lactobacillus plantarum. J. Bacteriol. 177: 586-595. (article)
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Le Bourgeois P., Lautier, M., van den, B. L., Serin, G., Nedjari, H., and Ritzenthaler, P. Physical and genetic maps of the chromosome of the Lactococcus lactis subsp. lactis strain IL1403 and Lactococcus lactis subsp. cremoris strain MG1363. Dev. Biol. Stand. 85: 597-603.
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Le Bourgeois P., Lautier, M., van den, B. L., Gasson, M. J., and Ritzenthaler, P. Physical and genetic map of the Lactococcus lactis subsp. cremoris MG1363 chromosome: comparison with that of Lactococcus lactis subsp. lactis IL 1403 reveals a large genome inversion. J. Bacteriol. 177: 2840-2850.(article)
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Le Bourgeois P., Lautier, M., and Ritzenthaler, P. Chromosome mapping in lactic acid bacteria. FEMS Microbiol. Rev. 12: 109-123. (abstract)
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Vasala, A., Dupont, L., Baumann, M., Ritzenthaler, P., and Alatossava, T. Molecular comparison of the structural proteins encoding gene clusters of two related Lactobacillus delbrueckii bacteriophages. J. Virol. 67: 3061-3068. (article)

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Le Bourgeois P., Lautier, M., Mata, M., and Ritzenthaler, P. Physical and genetic map of the chromosome of Lactococcus lactis subsp. lactis IL1403. J. Bacteriol. 174: 6752-6762. (article)

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Le Bourgeois P., Lautier, M., Mata, M., and Ritzenthaler, P. New tools for the physical and genetic mapping of Lactococcus strains. Gene. 111: 109-114.

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Schouler, C., Bouet, C., Ritzenthaler, P., Drouet, X., and Mata, M. Characterization of Lactococcus lactis phage antigens. Appl. Environ. Microbiol. 58: 2479-2484. http://aem.asm.org/cgi/reprint/58/8/2479?view=long&pmid=1514794

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Boizet, B., Lahbib-Mansais, Y., Dupont, L., Ritzenthaler, P., and Mata, M. Cloning, expression and sequence analysis of an endolysin-encoding gene of Lactobacillus bulgaricus bacteriophage mv1. Gene. 94: 61-67.
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Prevots, F., Mata, M., and Ritzenthaler, P. Taxonomic differentiation of 101 lactococcal bacteriophages and characterization of bacteriophages with unusually large genomes. Appl. Environ. Microbiol. 56: 2180-2185. (article)
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Le Bourgeois P., Mata, M., and Ritzenthaler, P. Genome comparison of Lactococcus strains by pulsed-field gel electrophoresis. FEMS Microbiol. Lett. 50: 65-69.
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Lahbib-Mansais, Y., Mata, M., and Ritzenthaler, P. Molecular taxonomy of Lactobacillus phages. Biochimie. 70: 429-435.
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Mata, M., and Ritzenthaler, P. Present state of lactic acid bacteria phage taxonomy. Biochimie. 70: 395-400.
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Relano, P., Mata, M., Bonneau, M., and Ritzenthaler, P. (1987) Molecular characterization and comparison of 38 virulent and temperate bacteriophages of Streptococcus lactis. J. Gen. Microbiol. 133: 3053-3063. (article)
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Mata, M., Trautwetter, A., Luthaud, G., and Ritzenthaler, P. (1986) Thirteen Virulent and Temperate Bacteriophages of Lactobacillus bulgaricus and Lactobacillus lactis Belong to a Single DNA Homology Group. Appl. Environ. Microbiol. 52: 812-818. (article)



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